List (not complete, yet) of Alan Shore's Boston Legal cases:

Episode 1x01 - The "Black Orphan Annie" Case
Episode 1x02 - Christine Pauley's Release Hearing
Episode 1x03 - Alan Shore vs Christine Pauley
Episode 1x04 - Alan Shore at his meanest
Episode 1x05 - Alan's Hypochondria Case
Episode 1x06 - The Bad Side of Politics
Episode 1x07 - Mack Attack
Episode 1x08 - The Cross-Dressing Santa Claus
Episode 1x09 - The SV113 Clinical Trial

Episode 2x04 - Catherine Piper's Murder Trial
Episode 2x06 - Alan Takes on the War in Iraq
Episode 2x09 - The Paintball Assault Case
Episode 2x12 - Jerry and Shirley's Cake-Knife Encounter
Episode 2x16 - The Euthanasia Case

Episode 3x01 - Jerry and Joanna's Prostitution Case
Episode 3x02 - Clarence/Clarice the Cross-dresser
Episode 3x03 - Ivan and Missy's Post-Nup Debate
Episode 3x04 - The Cannibal Case
Episode 3x05 - Jerry Fires the Scientologist
Episode 3x07 - Jerry Espenson's Perjury Trial
Episode 3x10 - The Singing Twins Custody Case